Well I've devised a simple workaround for this issue
Now I'm running an Apache/ISS combo. The ISS is targeted at the comic directory and using port 8080, it only needs to serve as a backup to load the images from the website comic directory. Since the main content of it is still swf based and these files are nice and small. Gotta love vector compression
Anyway, perhaps you can do the same for your files folder or simply create more ISS pages on different ports.
I know this is not a true fix, but its a nice workaround for the moment. Until someone comes along and set us up the bomb (sry couldn't resist)